| LoFreq is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or base/indel alignment uncertainty), which are usually ignored by other methods or only used for filtering. |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| with LoFreq | 2.1.5+galaxy3 | 18.01 | |