| Galaxy MultiQC wrapper
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Aggregate results from bioinformatics analyses across many samples into a single report
MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.
Prevent displaying MultiQC webpage as gibberish
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For Galaxy to display MultiQC's HTML output properly, you need to either:
1. Deactivate the sanitize_all_html option in galaxy.ini (sanitize_all_html = False), or
2. Whitelist the tool in "Manage Display Whitelist" after installing
Problems with encodings
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If you observe python Runtime errors because python3 is configured to use ASCII then set
`LC_ALL` and `LANG` in your job_conf.xml. See also https://github.com/galaxyproject/tools-iuc/issues/2362.
Support new modules
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Currently, the wrapper supports the modules for tools found on the MTS.
To add new ones, you can look at the patterns at https://github.com/ewels/MultiQC/blob/master/multiqc/utils/search_patterns.yaml
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