| khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name. The official repository is at https://github.com/ged-lab/khmer and you can read the docs online here: http://khmer.readthedocs.org/ There are two mailing lists dedicated to khmer, an announcements-only list and a discussion list. To search their archives and sign-up for them, please visit the following URLs: Discussion http://lists.idyll.org/listinfo/khmer Announcements http://lists.idyll.org/listinfo/khmer-announce |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/khmer_count_median
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Count the median/avg k-mer abundance for each sequence | 3.0.0a3+galaxy2 | 20.01 | |