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Repository genetrack

Name: genetrack

Owner: iuc

Synopsis: Contains a tool that separately identifies peaks on the forward "+” (W) and reverse “-” (C) strand.

Detailed description:

Contains a tool that separately identifies peaks on the forward "+” (W) and reverse “-” (C) strand.  The centroid
of read (tag) clusters represent a consensus nuclease stop point.  To calculate the centroid or peak, clusters of
tags are smoothed via a Gaussian distribution and the nearest coordinate at the peak is recorded.  No other peak
on the same strand is allowed to be called within a ± bp distance of the peak as defined by the exclusion zone. The
start and end of the exclusion zone is reported in the output dataset.

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/genetrack

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/genetrack/b41a4bb828a3

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/genetrack

Type: unrestricted

Revision: 4:b41a4bb828a3

This revision can be installed: True

Times cloned / installed: 549