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Repository kraken_biom
Name: kraken_biom
Owner: iuc
Synopsis: Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/)
The program takes as input, one or more files output from the kraken-report tool.
Each file is parsed and the counts for each OTU are recorded, along with database ID (e.g. NCBI), and lineage.
Content homepage: https://github.com/smdabdoub/kraken-biom
Development repository: https://github.com/smdabdoub/kraken-biom
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/kraken_biom/b582a159bb10
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/kraken_biom
Type: unrestricted
Revision: 2:b582a159bb10
This revision can be installed: True
Times cloned / installed: 150

Contents of this repository

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Name Description Version Minimum Galaxy Version
Create BIOM-format tables from kraken output 1.2.0+galaxy1 20.01

Categories
Metagenomics - Tools enabling the study of metagenomes