Galaxy |

Repository qupath_roi_splitter

Name: qupath_roi_splitter

Owner: galaxyp

Synopsis: QuPath ROI Splitter

Detailed description:

This Galaxy tool extracts ROI coordinates of QuPath TMA annotation by cell type.
It takes a collection containing GeoJSON files with QuPath annotation data as input and generates
a list of text files containing the ROI coordinates for each cell type.

Content homepage: https://github.com/npinter/ROIsplitter

Development repository: hhttps://github.com/npinter/ROIsplitter

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/galaxyp/qupath_roi_splitter/b5e9cebb27e3

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/qupath_roi_splitter

Type: unrestricted

Revision: 0:b5e9cebb27e3

This revision can be installed: True

Times cloned / installed: 294

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
QuPath ROI Splitter View tool metadata	Split ROI coordinates of QuPath TMA annotation by cell type (classification)	0.1.0	16.01