| http://code.google.com/p/ea-utils/wiki/FastqMcf
fastq-mcf attempts to: Detect X remove sequencing adapters and primers Detect limited skewing at the ends of reads and clip Detect poor quality at the ends of reads and clip Detect N's, and remove from ends Remove reads with CASAVA 'Y' flag (purity filtering) Discard sequences that are too short after all of the above Keep multiple mate-reads in sync while doing all of the above |
hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/fastq_mcf
| Name | Version | Type | |
|---|---|---|---|
| ea-utils | 1.1.2-484 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| sequence quality filtering and clipping | 1.0 | any | |