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Repository rmarkdown_fastq_dump
Name: rmarkdown_fastq_dump
Owner: mingchen0919
Synopsis: R Markdown based fastq-dump wrapper
Download and extract reads in fastq/fasta format from NCBI SRA and output a list or list:paired dataset collection.
Development repository: https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastq_dump
Link to this repository: https://toolshed.g2.bx.psu.edu/view/mingchen0919/rmarkdown_fastq_dump/b70047273f38
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/mingchen0919/rmarkdown_fastq_dump
Type: unrestricted
Revision: 3:b70047273f38
This revision can be installed: True
Times cloned / installed: 289

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Download and extract single end reads in fastq or fasta format from NCBI SRA. The output is a list of datasets collection. 1.0.1 16.01
Download and extract paired end reads in fastq or fasta format from NCBI SRA. The output is a list of paired datasets collection. 1.0.1 16.01

Categories
Data Source - Tools for retrieving data from external data sources
Fastq Manipulation - Tools for manipulating fastq data