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Repository samtools_bam_to_cram
Name: samtools_bam_to_cram
Owner: iuc
Synopsis: Converts alignments in BAM format to CRAM format.
This tool uses the SAMtools toolkit to convert BAM to CRAM files. The CRAM
format does additional compression relative to the reference genome which
makes the compression more efficient in terms of file size.
Content homepage: https://samtools.github.io/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/bam_to_cram
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/samtools_bam_to_cram/b9ea85dfaf45
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/samtools_bam_to_cram
Type: unrestricted
Revision: 7:b9ea85dfaf45
This revision can be installed: True
Times cloned / installed: 661

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
convert BAM alignments to CRAM format 1.15.1+galaxy2 20.05

Categories
Convert Formats - Tools for converting data formats
SAM - Tools for manipulating alignments in the SAM format