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Repository deeptools_compute_matrix
Name: deeptools_compute_matrix
Owner: bgruening
Synopsis: Wrapper for the deepTools: computeMatrix
deepTools address the challenge of visualizing the large amounts of data that
are now routinely generated from sequencing centers in a meaningful way. To do so,
deepTools contain useful routines to process the mapped reads data through removal of
duplicates and different filtering options to create coverage files in standard
bedGraph and bigWig file formats. deepTools allow the creation of normalized
coverage files or the comparison between two files (for example, treatment and control).

Finally, using such normalized and standardized files, multiple visualizations can be
created to identify enrichments with functional annotations of the genome.
For a gallery of images that can be produced and a description of the tools see http://f1000.com/posters/browse/summary/1094053

https://github.com/deeptools/deepTools
doi: 10.1093/nar/gku365
Wikipage: https://github.com/deeptools/deepTools/wiki

Repository-Maintainer: Björn Grüning

https://github.com/deeptools/deepTools
Development repository: https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/bgruening/deeptools_compute_matrix/babca70c3586
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix
Type: unrestricted
Revision: 12:babca70c3586
This revision can be installed: True
Times cloned / installed: 4261
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Repository data_manager_twobit_builder revision 9946bc39c834 owned by devteam

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Name Version Type
deeptools 2.4.2 package
python 2.7.10 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
prepares data for plotting a heatmap or a profile of given regions 2.5.0.0 any

Categories
ChIP-seq - Tools for analyzing and manipulating ChIP-seq data.
Convert Formats - Tools for converting data formats
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Visualization - Tools for visualizing data