| Due to licensing restrictions, a MANUAL INSTALL of the netMHC application is required. Install instructions in the tool README file. NetMHC 4.0 server predicts binding of peptides to a number of different HLA alleles using artificial neural networks (ANNs). SEE http://www.cbs.dtu.dk/services/NetMHC/ NetMHC is available to academic researchers. The download webpage requires the user to accept a academic license aggrement, which prevents automatic bioconda installation. http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?netMHC Download NetMHC 4.0 and install as described in netMHC-4.0.readme ( Be sure to do step 3 which installs the data from http://www.cbs.dtu.dk/services/NetMHC-4.0/data.tar.gz ) For Galaxy installation Add tool_depedencies/netMHC/4.0/env.sh The env.sh must define ENVIRONMENT variables NMHOME and TMPDIR For example, if you installed netMHC at /usr/local/netMHC-4.0 galaxy@galaxy % cat tool_dependencies/netMHC/4.0/env.sh export NMHOME=/usr/local/netMHC-4.0 export TMPDIR=/tmp export PATH=/usr/local/netMHC-4.0:$PATH |
hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/netmhc
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| MHC Binding prediction | 4.0.0 | 16.01 | |