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Repository pcdl_plot_scatter

Name: pcdl_plot_scatter

Owner: iuc

Synopsis: Galaxy wrapper for physicell dataloader function: pcdl_plot_scatter.

Detailed description:

Galaxy wrapper for the pcdl PhysiCell Data Loader command line commands for downstream analysis from PhysiCell output.

Content homepage: https://github.com/elmbeech/physicelldataloader

Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/tools/pcdl/

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/pcdl_plot_scatter/bc08e5879459

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/pcdl_plot_scatter

Type: unrestricted

Revision: 0:bc08e5879459

This revision can be installed: True

Times cloned / installed: 15

Repository README files - may contain important installation or license information

Readme files

pcdl
====

Galaxy wrapper for the pcdl PhysiCell Data Loader command line commands.
Pcdl is paramount for downstream analysis from PhysiCell output.
As such, the pcdl Galaxy tools are useful if you work with the interactive
PhysiCell Studio Galaxy tool.
+ https://usegalaxy.eu/?tool_id=interactive_tool_pcstudio&version=latest

You will have to unzip the PhysiCell output folder before you can run
pcdl Galaxy tools on it.
+ https://usegalaxy.eu/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fimgteam%2Funzip%2Funzip%2F6.0%2Bgalaxy0&version=latest
+ https://usegalaxy.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Frheiland%2Fphysicell_studio%2Finteractive_tool_pcstudio%2F0.3&version=latest

More information about PhysiCell, PhysiCell Studio, and PhysiCell Data Loader
can be found here:
+ https://physicell.org/index.html
+ https://physicell-studio.readthedocs.io/en/latest/index.html
+ https://github.com/elmbeech/physicelldataloader

Date: 2025-06-06
License: BSD-3-Clause
Author: Elmar Bucher