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Repository humann2
Name: humann2
Owner: bebatut
Synopsis: HUMAnN2 is a pipeline for efficiently and accuretly profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data.
Content homepage: http://huttenhower.sph.harvard.edu/humann2
Development repository: https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/
Link to this repository: https://toolshed.g2.bx.psu.edu/view/bebatut/humann2/bcd414bb721b
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bebatut/humann2
Type: unrestricted
Revision: 1:bcd414bb721b
This revision can be installed: True
Times cloned / installed: 468
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_numpy_1_9 revision f24fc0b630fc owned by iuc
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)
Repository package_bowtie_2_2_5 revision 30bd7eaeddbf owned by iuc
Repository package_diamond_0_7_10 revision c538574b1553 owned by iuc
Repository package_humann2_0_6_1 revision 655e87ac3364 owned by bebatut

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bowtie2 2.2.5 package
diamond 0.7.10 package
humann2 0.6.1 package
metaphlan2 2.5.0 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
HUMAnN2 databases 0.6.1 any
a HUMAnN2 generated table 0.6.1 any
to profile presence/absence and abundance of microbial pathways and gene families 0.6.1 any
HUMAnN2 generated tables 0.6.1 any
a HUMAnN2 generated table 0.6.1 any
features of a HUMAnN2 generated table 0.6.1 any
HUMAnN2 generated gene and pathway abundance tables 0.6.1 any
a HUMAnN2 generated table by features 0.6.1 any
a HUMAnN2 generated table 0.6.1 any

Categories
Metagenomics - Tools enabling the study of metagenomes