Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository nanopolish_variants
Name: nanopolish_variants
Owner: bgruening
Synopsis: Nanopolish tool: Nanopolish variants
Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base 
modifications, call SNPs and indels with respect to a reference genome and more.
Content homepage: https://github.com/jts/nanopolish
Development repository: https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish
Link to this repository: https://toolshed.g2.bx.psu.edu/view/bgruening/nanopolish_variants/bec636361cfd
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_variants
Type: unrestricted
Revision: 8:bec636361cfd
This revision can be installed: True
Times cloned / installed: 689

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
- Find SNPs of basecalled merged Nanopore reads and polishes the consensus sequences 0.14.0+galaxy0 22.01