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Repository optitype
Name: optitype
Owner: jjohnson
Synopsis: Precision HLA typing from NGS data
OptiType, is a novel HLA genotyping algorithm based on integer linear programming, capable of producing accurate 4-digit HLA genotyping predictions from NGS data by simultaneously selecting all minor and major HLA-I alleles.

https://github.com/FRED-2/OptiType
Development repository: https://github.com/jj-umn/galaxytools/tree/master/optitype
Link to this repository: https://toolshed.g2.bx.psu.edu/view/jjohnson/optitype/bf36e0afdfb4
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/optitype
Type: unrestricted
Revision: 2:bf36e0afdfb4
This revision can be installed: True
Times cloned / installed: 133

Contents of this repository

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Name Description Version Minimum Galaxy Version
HLA genotyping predictions from NGS data 1.3.5 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis