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Repository
suite_varscan
Name:
suite_varscan
Owner:
iuc
Synopsis:
VarScan contains tools for variant calling and copynumber estimation
Detailed description:
VarScan is a variant caller for high-throughput sequencing data.
Content homepage:
https://dkoboldt.github.io/varscan/
Development repository:
https://github.com/galaxyproject/iuc/tree/master/tools/varscan
Link to this repository:
https://toolshed.g2.bx.psu.edu/view/iuc/suite_varscan/c062f2da9018
Clone this repository:
hg clone
https://toolshed.g2.bx.psu.edu/repos/iuc/suite_varscan
Type:
repository_suite_definition
Revision:
12:c062f2da9018
This revision can be installed:
True
Times cloned / installed:
219
Dependencies of this repository
Repository dependencies
- VarScan contains tools for variant calling and copynumber estimation
Repository
varscan_mpileup
revision
db94eadb92c1
owned by
iuc
Repository
varscan_copynumber
revision
9f8dbbbc0267
owned by
iuc
Repository
varscan_somatic
revision
cf8ffc79db67
owned by
iuc
Categories
Variant Analysis
- Tools for single nucleotide polymorphism data such as WGA