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Repository data_manager_diamond_database_builder

Name: data_manager_diamond_database_builder

Owner: bgruening

Synopsis: Pre-generate indexes for Diamond

Detailed description:

DIAMOND_ is a new alignment tool for aligning short DNA sequencing reads to a protein reference database such as NCBI-NR. On Illumina reads of length 100-150bp, in fast mode, DIAMOND is about 20,000 times faster than BLASTX, while reporting about 80-90% of all matches that BLASTX finds, with an e-value of at most 1e-5. In sensitive mode, DIAMOND ist about 2,500 times faster than BLASTX, finding more than 94% of all matches.

Content homepage: https://github.com/bbuchfink/diamond

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_diamond_database_builder

Link to this repository: https://toolshed.g2.bx.psu.edu/view/bgruening/data_manager_diamond_database_builder/c1aaeaced1b6

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/data_manager_diamond_database_builder

Type: unrestricted

Revision: 5:c1aaeaced1b6

This revision can be installed: True

Times cloned / installed: 2448

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Diamond View tool metadata	Database builder	0.0.5	19.05

Data Managers
Name	Version	Data Tables
diamond_database_builder	0.0.1	diamond_database

Data Managers

Name

Version

Data Tables

diamond_database_builder

0.0.1

diamond_database