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Repository abricate

Name: abricate

Owner: iuc

Synopsis: Mass screening of contigs for antiobiotic resistance genes

Detailed description:

Mass screening of contigs for antimicrobial resistance or virulence genes. It comes bundled with
multiple databases: NCBI, CARD, ARG-ANNOT, Resfinder, NCBI, EcOH, PlasmidFinder, Ecoli_VF and VFDB.

Content homepage: https://github.com/tseemann/abricate

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/abricate/c2ef298da409

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/abricate

Type: unrestricted

Revision: 10:c2ef298da409

This revision can be installed: True

Times cloned / installed: 1364

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
ABRicate List View tool metadata	List all of abricate's available databases.	1.0.1	20.01
ABRicate Summary View tool metadata	Combine ABRicate results into a simple matrix of gene presence/absence	1.0.1	20.01
ABRicate View tool metadata	Mass screening of contigs for antimicrobial and virulence genes	1.0.1	20.01