| Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. It is an implementation of a special case of profile stochastic context-free grammars called covariance models (CMs). A CM is like a sequence profile, but it scores a combination of sequence consensus and RNA secondary structure consensus, so in many cases, it is more capable of identifying RNA homologs that conserve their secondary structure more than their primary sequence. http://infernal.janelia.org/ |
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/infernal
| Repository msa_datatypes revision 70227007b991 owned by iuc |
| Repository package_infernal_1_1 revision 2bac556aa73f owned by iuc |
| Repository package_gnu_coreutils_8_22 revision ac64dfe4b1fb owned by iuc |
| Name | Version | Type | |
|---|---|---|---|
| gnu_coreutils | 8.22 | package | |
| infernal | 1.1 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| against a sequence database (cmsearch) | 1.1.0.2 | any | |
| for covariance model (cmstat) | 1.1.0.1 | any | |
| from sequence alignments (cmbuild) | 1.1.0.2 | any | |