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Repository humann2_genefamilies_genus_level

Name: humann2_genefamilies_genus_level

Owner: iuc

Synopsis: Wrapper for the humann2 tool suite: Create a genus level gene families file

Detailed description:

HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways
in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads).
This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community
and its members. More generally, functional profiling answers the question "What are the microbes in my community-of-interest
doing (or capable of doing)?"

Content homepage: http://huttenhower.sph.harvard.edu/humann2

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/humann2_genefamilies_genus_level/c7ac7103023d

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/humann2_genefamilies_genus_level

Type: unrestricted

Revision: 0:c7ac7103023d

This revision can be installed: True

Times cloned / installed: 1401

Repository README files - may contain important installation or license information

Readme files

Galaxy wrappers for HUMAnN2 =========================== Galaxy should be able to automatically install the dependencies, i.e. the HUMAnN2 binaries and its dependencies. After installation, you must tell Galaxy about the default databases for MetaPhlAn2 and HUMAnN2. You need to use the data managers for that and installing: - MetaPhlAn2 database - HUMAnN2 nucleotide database - HUMAnN2 protein database