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Repository group_humann2_uniref_abundances_to_go
Name: group_humann2_uniref_abundances_to_go
Owner: bebatut
Synopsis: Group abundances of UniRef50 gene families obtained with HUMAnN2 to Gene Ontology (GO) slim terms with relative abundances
Content homepage: https://github.com/ASaiM/group_humann2_uniref_abundances_to_GO
Development repository: https://github.com/ASaiM/galaxytools/tree/master/tools/group_humann2_uniref_abundances_to_GO
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/bebatut/group_humann2_uniref_abundances_to_go/cad28d7b49d2
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bebatut/group_humann2_uniref_abundances_to_go
Type: unrestricted
Revision: 0:cad28d7b49d2
This revision can be installed: True
Times cloned / installed: 697
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_fisher_0_1_4 revision 07479e0cbc5f owned by iuc (prior install required)
Repository package_python_2_7_statsmodels_0_6_1 revision ae7f41481998 owned by iuc (prior install required)
Repository package_python_2_7_xlsxwriter_0_8_5 revision 4133d7fe41e1 owned by iuc (prior install required)
Repository package_python_2_7_wget_3_2 revision c7aaab8b0202 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_numpy_1_9 revision f24fc0b630fc owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_numpy_1_9 revision f24fc0b630fc owned by iuc (prior install required)
Repository package_python_2_7_scipy_0_16 revision 80f8536c6dc2 owned by iuc (prior install required)
Repository package_python_2_7_pandas_0_16 revision 2511234c20da owned by iuc (prior install required)
Repository package_python_2_7_patsy_0_4_1 revision 91bec433bbcc owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_python_2_7_numpy_1_9 revision f24fc0b630fc owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_numpy_1_9 revision f24fc0b630fc owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_numpy_1_9 revision f24fc0b630fc owned by iuc (prior install required)
Repository package_python_2_7_six_1_10_0 revision 6944ba405057 owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_humann2_0_6_1 revision 655e87ac3364 owned by bebatut

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
goatools 0.6.4 package
group_humann2_uniref_abundances_to_go 1.2.0 package
humann2 0.6.1 package
numpy 1.9 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
of UniRef50 gene families obtained (HUMAnN2 output) to Gene Ontology (GO) slim terms 1.2.0 any

Categories
Metagenomics - Tools enabling the study of metagenomes