The settings for name, version and type from a contained tool configuration file's requirement tag does not match the information for the following tool dependency definitions in the tool_dependencies.xml file, so these tool dependencies have no relationship with any tools within this repository.
* name: blast+, type: package, version: 2.2.29
* name: cufflinks, type: package, version: 2.1.1
* name: cufflinks, type: package, version: 2.2.1
* name: fastq_groomer, type: package, version: 1.0.0
Repository ngsap2
Name: ngsap2
Owner: mytest
Synopsis: ngsap2
ngsap2
Link to this repository: https://toolshed.g2.bx.psu.edu/view/mytest/ngsap2/cc71440b759f
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/mytest/ngsap2
Type: unrestricted
Revision: 0:cc71440b759f
This revision can be installed: True
Times cloned / installed: 318
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_bowtie2_2_1_0 revision 017a00c265f1 owned by devteam
Repository package_samtools_0_1_18 revision 171cd8bc208d owned by devteam
Repository package_tophat2_2_0_9 revision 8549fd545473 owned by devteam
Repository package_galaxy_utils_1_0 revision 8882f14715b5 owned by devteam
Repository blast_datatypes revision 01b38f20197e owned by devteam
Repository package_blast_plus_2_2_29 revision 18496de7706f owned by iuc
Repository package_cufflinks_2_1_1 revision a8f40accd7ce owned by devteam
Repository package_cufflinks_2_2_1 revision 899067a260d1 owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
blast+ 2.2.29 package
bowtie 0.12.7 package
bowtie2 2.1.0 package
cufflinks 2.1.1 package
cufflinks 2.2.1 package
eXpress 1.5.1 package
fastq_groomer 1.0.0 package
rsem 1.1.17 package
samtools 0.1.18 package
tophat2 2.0.9 package
trinityrnaseq 2013_08_14 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Generates combined Matrix for abundance estimates 1.0 any
Read Normalization 0.0.1 any
De novo assembly of RNA-Seq data Using Trinity 0.0.1 any
Generates results for DE 1.0 any
check stats... 1.0 any
parses Blast Output File 0.0.1 any
align_and_estimate_abundance 1.0 any
Converts gtf to fasta 1.0 any
coding region 1.0 any