Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository dropletutils
Name: dropletutils
Owner: iuc
Synopsis: DropletUtils - Utilities for handling droplet-based single-cell RNA-seq data
Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading from count matrices or molecule information files, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.
Content homepage: https://bioconductor.org/packages/devel/bioc/html/DropletUtils.html
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/dropletutils/
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/dropletutils/cdf4443d5625
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dropletutils
Type: unrestricted
Revision: 5:cdf4443d5625
This revision can be installed: True
Times cloned / installed: 901

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Utilities for handling droplet-based single-cell RNA-seq data 1.2.1+galaxy6 16.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis