Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository bcftools_mpileup
Name: bcftools_mpileup
Owner: iuc
Synopsis: Wrapper for bcftools application bcftools mpileup.
BCFtools are meant as a faster replacement for most of the perl VCFtools commands.
Content homepage: https://samtools.github.io/bcftools/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/bcftools_mpileup/ce9396ddcb2b
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bcftools_mpileup
Type: unrestricted
Revision: 9:ce9396ddcb2b
This revision can be installed: True
Times cloned / installed: 1767

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Generate VCF or BCF containing genotype likelihoods for one or multiple alignment (BAM or CRAM) files 1.10 16.01

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA