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Repository bowtie2
Name: bowtie2
Owner: devteam
Synopsis: Bowtie2: Fast and sensitive read alignment
Bowtie is an ultrafast and memory-efficient tool for aligning sequencing
reads to long reference sequences. It is particularly good at aligning reads of
about 50 up to 100s or 1,000s of characters to relatively long (e.g. mammalian)
genomes. Bowtie 2 supports gapped, local, and paired-end alignment modes. Bowtie
2 outputs alignments in SAM format, enabling interoperation with a large number
of other tools.
Content homepage: http://bowtie-bio.sourceforge.net/bowtie2
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/bowtie2
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/bowtie2/ceb6467e276c
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/bowtie2
Type: unrestricted
Revision: 3:ceb6467e276c
This revision can be installed: True
Times cloned / installed: 26321
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_bowtie_2_2_4 revision 172979b6bf77 owned by devteam
Repository package_samtools_0_1_18 revision 171cd8bc208d owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bowtie2 2.2.4 package
samtools 0.1.18 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
- map reads against reference genome 0.4 16.01

Categories
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data