Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository allele_counts
Name: allele_counts
Owner: nick
Synopsis: Variant Annotator: count variants and calculate statistics
This tool parses variant counts from a type of VCF file produced by tools like the Naive Variant Detector. In addition to producing variant counts, the tool can filter by frequency, coverage, and strand bias, produce allele totals, and calculate minor allele frequencies.
Content homepage: https://github.com/NickSto/variant-annotator
Development repository: https://github.com/NickSto/variant-annotator
Link to this repository: https://toolshed.g2.bx.psu.edu/view/nick/allele_counts/cf2af5c3118c
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/nick/allele_counts
Type: unrestricted
Revision: 11:cf2af5c3118c
This revision can be installed: True
Times cloned / installed: 1235

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
process variant counts 1.3.2 16.01

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA