| This tool is a naive variant caller (NVC) that processes aligned sequencing reads from the BAM format and produces a VCF file containing per position variant calls. This tool allows multiple BAM files to be provided as input and utilizes read group information to make calls for individual samples. https://github.com/blankenberg/nvc |
hg clone https://toolshed.g2.bx.psu.edu/repos/blankenberg/naive_variant_caller
| Name | Version | Type | |
|---|---|---|---|
| numpy | 1.7.1 | package | |
| pyBamParser | 0.0.1 | package | |
| pyBamTools | 0.0.2 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| - tabulate variable sites from BAM datasets | 0.0.2 | any | |