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Repository varscan_somatic
Name: varscan_somatic
Owner: iuc
Synopsis: Wrapper for VarScan somatic
VarScan is a variant caller for high-throughput sequencing data.
Content homepage: https://dkoboldt.github.io/varscan/
Development repository: https://github.com/galaxyproject/iuc/tree/master/tools/varscan
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/varscan_somatic/d37adcc2ec03
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/varscan_somatic
Type: unrestricted
Revision: 5:d37adcc2ec03
This revision can be installed: True
Times cloned / installed: 991

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Call germline/somatic and LOH variants from tumor-normal sample pairs 2.4.3.2 16.01

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA