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Repository vcfprimers
Name: vcfprimers
Owner: devteam
Synopsis: Extract flanking sequences for each VCF record
For each VCF record, extract the flanking sequences, and write them to stdout as FASTA
records suitable for alignment.  This tool is intended for use in designing validation
experiments.  Primers extracted which would flank all of the alleles at multi-allelic sites.
Content homepage: https://github.com/ekg/vcflib
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfprimers
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/vcfprimers/d485f9f1aa83
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/vcfprimers
Type: unrestricted
Revision: 1:d485f9f1aa83
This revision can be installed: True
Times cloned / installed: 3148
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_vcflib_8a5602bf07 revision 7e67466b033e owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
vcflib 8a5602bf07 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Extract flanking sequences for each VCF record 0.0.3 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA