Repository krakentools
Name: krakentools
Owner: jvolkening
Synopsis: Utilities for downstream analysis of Kraken/Kraken2/KrakenUniq/Bracken output
KrakenTools is a suite of individual scripts designed for use with Kraken,
KrakenUniq, Kraken2, and Bracken. These scripts provide users of the above
classification/abundance estimation tools additional support primarily for
downstream analysis of Kraken/Bracken results.
Content homepage: https://github.com/jenniferlu717/KrakenTools
Development repository: https://github.com/jvolkening/galaxy-tools/tree/master/tools/krakentools
Link to this repository: https://toolshed.g2.bx.psu.edu/view/jvolkening/krakentools/d491c23394f9
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/jvolkening/krakentools
Type: unrestricted
Revision: 0:d491c23394f9
This revision can be installed: True
Times cloned / installed: 208

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Extract reads that were classified by the Kraken family at specified taxonomic IDs 1.2+galaxy1 17.09
Convert a Kraken/Kraken2 report to a Krona-compatible text file 1.2+galaxy1 17.09

Categories
Metagenomics - Tools enabling the study of metagenomes
Convert Formats - Tools for converting data formats