Repository ncbi_fcs_adaptor
Name: ncbi_fcs_adaptor
Owner: richard-burhans
Synopsis: FCS-adaptor detects adaptor and vector contamination in genome sequences.
FCS-adaptor detects adaptor and vector contamination in genome
sequences. FCS-adaptor is a high-throughput implementation of NCBI
VecScreen. The FCS-adaptor executable retrieves a Docker or Singularity
container and runs a pipeline to screen input sequences against a
non-redudant database of adaptors and vectors using stringent BLAST
searches and remove contaminants from your genome.
Content homepage: https://github.com/ncbi/fcs
Development repository: https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_fcs_adaptor
Link to this repository: https://toolshed.g2.bx.psu.edu/view/richard-burhans/ncbi_fcs_adaptor/d55ad8533d58
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/richard-burhans/ncbi_fcs_adaptor
Type: unrestricted
Revision: 0:d55ad8533d58
This revision can be installed: True
Times cloned / installed: 57

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
detects contamination from foreign organisms in genome sequences 0.5.0+galaxy0 21.05

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis