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Repository diffbind
Name: diffbind
Owner: bgruening
Synopsis: Diffbind provides functions for processing ChIP-Seq data.
Diffbind provides functions for  processing  ChIP-Seq  data  enriched  for  genomic  loci  where  specific  protein/DNA  binding  occurs,  including  peak sets  identified  by  ChIP-Seq  peak  callers  and  aligned  sequence  read  datasets. http://bioconductor.org/packages/release/bioc/html/DiffBind.html
Content homepage: http://bioconductor.org/packages/release/bioc/html/DiffBind.html
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/diffbind
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/bgruening/diffbind/d6dcb3dd5f8f
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/diffbind
Type: unrestricted
Revision: 3:d6dcb3dd5f8f
This revision can be installed: True
Times cloned / installed: 1398
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_readline_6_2 revision 5313ca2fbce6 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_cairo_1_12_14 revision cd2ed5717e38 owned by devteam (prior install required)
Repository package_pixman_0_32_4 revision 93cd8e03820c owned by devteam (prior install required)
Repository package_freetype_2_5_2 revision a65217367e4a owned by devteam (prior install required)
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_r_3_0_3 revision afc48696ee5c owned by iuc (prior install required)
Repository package_libxml2_2_9_1 revision 45b16a3ab504 owned by iuc (prior install required)
Repository package_pixman_0_32_4 revision 93cd8e03820c owned by devteam (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_freetype_2_5_2 revision a65217367e4a owned by devteam (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_libxml2_2_9_1 revision 45b16a3ab504 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
R 3.0.3 package
deseq2 1.2.10 package
diffbind 1.8.3 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
differential binding analysis of ChIP-Seq peak data 2.1.0 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis