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Repository find_subsequences
Name: find_subsequences
Owner: bgruening
Synopsis: Searches for a subsequence in a larger sequence. For example to get all restriction enzymes for BamH1.
Searches for a subsequence in a larger sequence. For example to get all restriction enzymes for BamH1.

This tool is based on biopython: 10.1093/bioinformatics/btp163

Repository-Maintainer: Bjoern Gruening
Repository-Development: https://github.com/bgruening/galaxytools
Link to this repository: https://toolshed.g2.bx.psu.edu/view/bgruening/find_subsequences/d882a0a75759
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/find_subsequences
Type: unrestricted
Revision: 1:d882a0a75759
This revision can be installed: True
Times cloned / installed: 2491
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_numpy_1_9 revision 83d12e13dbbd owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_python_2_7 revision f761bd14343e owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
biopython 1.65 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
providing regions in BED format 0.2 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis