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Repository sam_stats
Name: sam_stats
Owner: lparsons
Synopsis: sam-stats generates basic sam/bam stats (from ea-utils package)

Generates a number of useful statistics about SAM/BAM files.  In particular, it can output the number of unique read ids aligned (as opposed to the number of alignments), which can be very useful.
Content homepage: https://code.google.com/p/ea-utils/
Development repository: https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats
Link to this repository: https://toolshed.g2.bx.psu.edu/view/lparsons/sam_stats/da985dad64c0
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/lparsons/sam_stats
Type: unrestricted
Revision: 2:da985dad64c0
This revision can be installed: True
Times cloned / installed: 462
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_ea_utils_1_1_2_806 revision cea0aa441b97 owned by lparsons

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
ea-utils 1.1.2-806 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
- Compute statistics from SAM or BAM files 1.38.763 any

Categories
SAM - Tools for manipulating alignments in the SAM format