Repository blast_top_hit_species
Name: blast_top_hit_species
Owner: peterjc
Synopsis: Workflow to count species of top nr BLASTX hits of a transcriptome
This is a non-trivial example workflow using the NCBI BLAST+ wrappers, intended only for crude crude contamination assessment of a transcriptome assembly.

This would ideally include a visualisation of the finally tally table as a Pie Chart, currently not possible with the Galaxy Visualization Framework.
Content homepage: https://github.com/peterjc/galaxy_blast/tree/master/workflows/blast_top_hit_species
Development repository: https://github.com/peterjc/galaxy_blast/tree/master/workflows/blast_top_hit_species
Link to this repository: https://toolshed.g2.bx.psu.edu/view/peterjc/blast_top_hit_species/db0c1bb92308
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/blast_top_hit_species
Type: unrestricted
Revision: 2:db0c1bb92308
This revision can be installed: True
Times cloned / installed: 907
Dependencies of this repository

Repository dependencies - This workflow requires the NCBI BLAST+ tools etc
Repository blast_datatypes revision 01b38f20197e owned by devteam
Repository package_blast_plus_2_2_29 revision 18496de7706f owned by iuc
Repository package_biopython_1_65 revision d8185f5631ed owned by biopython
Repository package_numpy_1_9 revision 83d12e13dbbd owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_python_2_7 revision f761bd14343e owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)
Repository fasta_to_tabular revision 7e801ab2b70e owned by devteam
Repository unique revision 7ce75adb93be owned by bgruening

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis