Galaxy |

Repository xcms_plot_chromatogram

Name: xcms_plot_chromatogram

Owner: lecorguille

Synopsis: [Metabolomics][W4M][LC-MS] XCMS R Package - Preprocessing - Plot base peak intensity chromatogram (BPI) and total ion chromatogram (TIC)

Detailed description:

Plot base peak intensity chromatogram (BPI) and total ion chromatogram (TIC)
Part of the W4M project: http://workflow4metabolomics.org
XCMS: http://www.bioconductor.org/packages/release/bioc/html/xcms.html

Content homepage: https://github.com/sneumann/xcms

Development repository: https://github.com/workflow4metabolomics/tools-metabolomics/

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/lecorguille/xcms_plot_chromatogram/dbd877060ac3

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram

Type: unrestricted

Revision: 10:dbd877060ac3

This revision can be installed: True

Times cloned / installed: 1190

Repository README files - may contain important installation or license information

Readme files

Changelog/News -------------- .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS **Version 3.6.1.0 - 03/09/2019** - UPGRADE: upgrade the xcms version from 3.4.4 to 3.6.1 (see XCMS News_) **Version 3.4.4.0 - 08/02/2019** - UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.4 (see XCMS News_) **Version 3.0.0.0 - 07/03/2018** - NEW: This new tool will plot base peak intensity chromatogram (BPI) and total ion chromatogram (TIC) from xcms experience. It will replace the one created by xcmsSet and retcor tools.

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
xcms plot chromatogram View tool metadata	Plots base peak intensity chromatogram (BPI) and total ion current chromatogram (TIC) from MSnbase or xcms experiment(s)	3.6.1.0	16.01