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Repository snpsift_dbnsfp

Name: snpsift_dbnsfp

Owner: iuc

Synopsis: snpEff SnpSift dbnsfp tool from Pablo Cingolani

Detailed description:

Annotates variants on genes using the dbNSFP, an integrated database of human
functional predictions from multiple algorithms (SIFT, Polyphen2, LRT and
MutationTaster, PhyloP and GERP++, etc.)

Content homepage: http://snpeff.sourceforge.net/SnpSift.html#dbNSFP

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift_dbnsfp

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/snpsift_dbnsfp/dc480609d9c1

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/snpsift_dbnsfp

Type: unrestricted

Revision: 0:dc480609d9c1

This revision can be installed: True

Times cloned / installed: 622

Repository README files - may contain important installation or license information

Readme files

These are galaxy tools for SnpEff a variant annotation and effect prediction tool by Pablo Cingolani. It annotates and predicts the effects of variants on genes (such as amino acid changes). ( http://snpeff.sourceforge.net/ ) This repository contains a tool_dependencies.xml file that will attempt to automatically install SnpEff and SnpSift. SnpEff citation: "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly (Austin). 2012 Apr-Jun;6(2):80-92. PMID: 22728672 [PubMed - in process] SnpSift citation: "Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift", Cingolani, P., et. al., Frontiers in Genetics, 3, 2012.