Repository revision
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Repository samtool_filter2
Name: samtool_filter2
Owner: devteam
Synopsis: Filter BAM/SAM on FLAG,MAPQ,RG,LB or by region and produce a BAM/SAM on demand
Uses samtools view to filter a BAM/SAM on FLAG, MAPQ, RG, LB or by region.
Content homepage: https://www.htslib.org/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/samtool_filter2
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/samtool_filter2/dc6ff68ea5e8
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtool_filter2
Type: unrestricted
Revision: 6:dc6ff68ea5e8
This revision can be installed: True
Times cloned / installed: 7543
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
samtools 1.2 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
files on FLAG MAPQ RG LN or by region 1.1.2 any

Categories
SAM - Tools for manipulating alignments in the SAM format