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Repository jellyfish

Name: jellyfish

Owner: iuc

Synopsis: Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA

Detailed description:

Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. Jellyfish can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

Content homepage: https://github.com/gmarcais/Jellyfish

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/jellyfish

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/jellyfish/dcd30574a456

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/jellyfish

Type: unrestricted

Revision: 2:dcd30574a456

This revision can be installed: True

Times cloned / installed: 379