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Repository msconvert
Name: msconvert
Owner: galaxyp
Synopsis: msconvert Convert and/or filter mass spectrometry files (including vendor formats) using the official Docker container
Proteowizard msconvert
Convert and/or filter mass spectrometry files using the offical Docker container.
Using the Docker container requires agreeing to each vendor's license (for using their proprietary data access libraries): http://www.proteowizard.org/licenses.html

Main web site: http://www.proteowizard.org
Content homepage: http://proteowizard.sourceforge.net/tools.shtml
Development repository: https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/galaxyp/msconvert/dd4ba10d0c45
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/msconvert
Type: unrestricted
Revision: 9:dd4ba10d0c45
This revision can be installed: True
Times cloned / installed: 1833

Repository README files - may contain important installation or license information

Readme files
**NOTE** This tool must be run on a Windows Operating System. Your system administrator will need to: - install proteowizard on a windows server http://proteowizard.sourceforge.net/downloads.shtml - install the galaxy pulsar rest server on the windows server http://pulsar.readthedocs.org/en/latest/ - setup the galaxy job_conf.xml to send msconvert jobs to the windows server via pulsar https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster https://wiki.galaxyproject.org/Admin/Config/Jobs http://pulsar.readthedocs.org/en/latest/job_managers.html
Dependencies of this repository

Repository dependencies - Required proteomics dependencies.
Repository proteomics_datatypes revision 300fc3aa6954 owned by iracooke
Repository package_proteowizard_3_0_9016 revision e9ae8f0be737 owned by galaxyp

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
proteowizard 3.0.9016 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
against list of scan numbers or indices. 0.3.0 any
Convert and filter a mass spec peak list 0.3.0 any
Convert and filter a Thermo Finnigan RAW file 0.3.0 any
Convert and/or filter mass spectrometry files (with vendor support on Windows) 3.0.0 any
Convert and/or filter mass spectrometry files 3.0.0 any
Convert mass spectrometry identification files 3.0.0 any

Categories
Proteomics - Tools enabling the study of proteins