Repository digital_dge
Name: digital_dge
Owner: fubar
Synopsis: Wrapper for RNA-seq DGE using the edgeR bioconductor package
Given a tabular file containing counts of reads overlapping exons or other contigs from two groups (eg treatment, control) of RNA-seq samples with biological replicates, this tool runs edgeR to estimate the probability of each contig being differentially expressed. The companion bams2mx tool is recommended for creating appropriate input files from RNA-seq data mapped to either a transcriptome or genome as BAM files.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/fubar/digital_dge/dd69d0a22d92
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/fubar/digital_dge
Type: unrestricted
Revision: 3:dd69d0a22d92
This revision can be installed: False
Times cloned / installed: 454

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Name Description Version Minimum Galaxy Version
for RNA counts 0.01 any

Categories
Statistics - Tools for generating statistics