Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository infercnv
Name: infercnv
Owner: iuc
Synopsis: Wrapper for InferCNV.
InferCNV is used to explore tumor single cell RNA-Seq data to identify evidence for somatic large-scale chromosomal copy number alterations, such as gains or deletions of entire chromosomes or large segments of chromosomes.
Content homepage: https://github.com/broadinstitute/infercnv
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/infercnv
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/infercnv/ddbace8f3277
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/infercnv
Type: unrestricted
Revision: 1:ddbace8f3277
This revision can be installed: True
Times cloned / installed: 27

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Infer Copy Number Variation from Single-Cell RNA-Seq Data 1.20.0+galaxy1 21.09

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA