Galaxy |

Repository bih4maconda

Name: bih4maconda

Owner: fgiacomoni

Synopsis: [W4M][LC-MS] Bank In House for MaConDa - Annotation - Utility to detect potential contaminants in your peak list based on MaConDa database.

Detailed description:

Part of the MetaboHUB National Infrastructure. The process uses MaConDa database, FragNot package and BiH engine and returns outputs files (CSV and HTML formats).

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/fgiacomoni/bih4maconda/de13e2c45971

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/fgiacomoni/bih4maconda

Type: unrestricted

Revision: 0:de13e2c45971

This revision can be installed: True

Times cloned / installed: 143

Repository README files - may contain important installation or license information

Readme files

## ****** MON_MODULE environnemnt : ****** ## # version 0.1 2019 F Giacomoni ## --- PERL compilator / libraries : --- ## $ perl -v This is perl, v5.10.1 (*) built for x86_64-linux-thread-multi # libs CORE PERL : use strict ; use warnings ; use Carp qw (cluck croak carp) ; use Exporter ; use Data::Dumper ; use Getopt::Long ; use FindBin ; # libs CPAN PERL : $ perl -e 'use XX::XX' $ sudo perl -MCPAN -e shell cpan> install XX::XX -- ## --- Binary dependencies --- ## Install folowing binaries : -- ## --- Config : --- ## Edit the config file : /path/*.conf -- ## --- XML HELP PART --- ## Copy the following images in ~/static/images/metabolomics : -- ## --- DATASETS --- ## -- ## --- ??? COMMENTS ??? --- ## --

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Bih4MaConDa View tool metadata	: Utility to detect potential contaminants in your peak list based on MaConDa database	0.1.3	16.01