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Repository stringtie

Name: stringtie

Owner: iuc

Synopsis: StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.

Detailed description:

StringTie is a fast and highly efficient assembler of RNA-Seq alignments
into potential transcripts. It is primarily a genome-guided transcriptome assembler,
although it can borrow algorithmic techniques from de novo genome assembly to help
with transcript assembly. Its input can include not only the spliced read alignments
used by reference-based assemblers, but also longer contigs that were assembled
de novo from unambiguous, non-branching parts of a transcript.

Content homepage: http://ccb.jhu.edu/software/stringtie/

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/stringtie/df42808cc33a

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/stringtie

Type: unrestricted

Revision: 4:df42808cc33a

This revision can be installed: True

Times cloned / installed: 4019