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Repository cufflinks
Name: cufflinks
Owner: devteam
Synopsis: Galaxy wrappers for the Cufflinks tool.
Cufflinks assembles transcripts, estimates their abundances, and
tests for differential expression and regulation in RNA-Seq samples. It accepts
aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts.
Cufflinks then estimates the relative abundances of these transcripts based on how
many reads support each one.
Content homepage: http://cole-trapnell-lab.github.io/cufflinks/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cufflinks
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/cufflinks/e04dbae2abe0
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/cufflinks
Type: unrestricted
Revision: 11:e04dbae2abe0
This revision can be installed: True
Times cloned / installed: 9275

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
transcript assembly and FPKM (RPKM) estimates for RNA-Seq data 2.2.1.2 any

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.