Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository snpeff
Name: snpeff
Owner: iuc
Synopsis: SnpEff is a genetic variant annotation and effect prediction toolbox
Variant annotation and effect prediction tools. It annotates and
predicts the effects of variants on genes. There
are data managers for tha Galaxy admin to download genome databases.
Content homepage: http://snpeff.sourceforge.net/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/snpeff/e09ce114d240
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/snpeff
Type: unrestricted
Revision: 2:e09ce114d240
This revision can be installed: True
Times cloned / installed: 8291
Dependencies of this repository

Repository dependencies - This requires the SnpEff datatype definitions.
Repository snpeff_datatypes revision 2b53f59de80c owned by iuc
Repository package_snpeff_4_0 revision 792d8f4485fb owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
snpEff 4.0 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
4.0.0 any
Download a new database 4.0.0 any
Variant effect and annotation 4.0.0 any

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA