| Galaxy wrappers for several standalone command line sequence analysis tools: SignalP 3.0 predicts signal peptides, see: http://www.cbs.dtu.dk/services/SignalP/ TMHMM 2.0 predicts transmembrane helices, see: http://www.cbs.dtu.dk/services/TMHMM/ Promoter 2.0 predicts eukaryotic PolII promoters, see: http://www.cbs.dtu.dk/services/Promoter/ WoLF PSORT predicts eukaryote protein sub-cellular localization, see: http://wolfpsort.org/ POSRTb predicts prokaryote protein sub-cellular localization, see: http://www.psort.org/documentation/index.html Oomycete RXLR motif prediction - a Python script implementing three published methods, which calls SignalP 3.0 and HMMER 2.3.2 internally. To use these Galaxy wrappers you must first install the command line tools, which at the the time of writing are all free for academic use or open source. |
hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Determines sub-cellular localisation of bacterial/archaeal protein sequences | 0.0.10 | 16.01 | |
| Find eukaryotic PolII promoters in DNA sequences | 0.0.13 | 16.01 | |
| Find signal peptides in protein sequences | 0.0.20 | 16.01 | |
| Eukaryote protein subcellular localization prediction | 0.0.12 | 16.01 | |
| Find RXLR Effectors of Plant Pathogenic Oomycetes | 0.0.17 | 16.01 | |
| Find transmembrane domains in protein sequences | 0.0.17 | 16.01 | |