Galaxy |

Repository clifinder

Name: clifinder

Owner: clifinder

Synopsis: Identification of L1 Chimeric Transcripts in RNA-seq data

Detailed description:

L1 Chimeric Transcripts (LCTs) are transcribed from LINE 1 antisense promoter and include the L1 5’UTR sequence in antisense orientation followed by the adjacent genomic region. CLIFinder is a Galaxy tool, specifically designed to identify potential LCTs from one or several oriented RNA-seq paired-end reads in the human genome. CLIFinder is customizable to detect transcripts initiated by different types of repeat elements.

Content homepage: https://github.com/GReD-Clermont/CLIFinder/

Development repository: https://github.com/GReD-Clermont/CLIFinder/

Link to this repository: https://toolshed.g2.bx.psu.edu/view/clifinder/clifinder/e50f9ebde308

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/clifinder/clifinder

Type: unrestricted

Revision: 22:e50f9ebde308

This revision can be installed: True

Times cloned / installed: 540

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
CLIFinder View tool metadata	Find chimerics transcripts containing LINEs sequences	0.5.2	16.01