Galaxy |

Repository plantseg

Name: plantseg

Owner: imgteam

Synopsis: Tool for cell instance aware segmentation in densely packed 3D volumetric images

Detailed description:

PlantSeg is a tool for cell instance aware segmentation in densely packed 3D volumetric images. The pipeline uses a two stages segmentation strategy (Neural Network + Segmentation). The pipeline is tuned for plant cell tissue acquired with confocal and light sheet microscopy.

Content homepage: https://github.com/bmcv

Development repository: https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/plantseg/

Link to this repository: https://toolshed.g2.bx.psu.edu/view/imgteam/plantseg/e59c0e930b1f

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/imgteam/plantseg

Type: unrestricted

Revision: 0:e59c0e930b1f

This revision can be installed: True

Times cloned / installed: 62