Galaxy |

Repository revision

Repository edge_pro

Name: edge_pro

Owner: crs4

Synopsis: Gene expression in Prokaryotes

Detailed description:

EDGE-pro (Estimated Degree of Gene Expression in PROkaryotes) is an efficient software system to estimate gene expression levels in prokaryotic genomes from RNA-seq data. EDGE-pro uses Bowtie2 for alignment and then estimates expression directly from the alignment results.
EDGE-pro includes routines to assign reads aligning to overlapping gene regions accurately. 15% or more of bacterial genes overlap other genes, making this a significant problem for bacterial RNA-seq, one that is generally ignored by programs designed for eukaryotic RNA-seq experiments.

Content homepage: http://ccb.jhu.edu/software/EDGE-pro/

Development repository: https://bitbucket.org/crs4/orione-tools/src/bb-orione-tools/custom/edge_pro/

Link to this repository: https://toolshed.g2.bx.psu.edu/view/crs4/edge_pro/e6e6f5f9b9c4

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/crs4/edge_pro

Type: unrestricted

Revision: 6:e6e6f5f9b9c4

This revision can be installed: True

Times cloned / installed: 483